PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001694.1.g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 656aa    MW: 75220.2 Da    PI: 9.1487
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001694.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1576.2e-1840157190
                            FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.........................teker 52 
                                     +fY+ Y++ vGFs+++ k +k+  k ++ i +r + Cskeg+ ++ k+k                         +++  
  FANhyb_rscf00001694.1.g00002.1  40 QFYSYYSYIVGFSTKRYKIEKRhvKGTEVIFRRAWACSKEGHCKTLKNKkqvpfvlkvgedgnekagtekskgkKKDVA 118
                                     6***************99888766889999***********9998877789****************999887666667 PP

                            FAR1  53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                                     r+ + trtgC a + vk++k +gk++v+k+ +eHnH la
  FANhyb_rscf00001694.1.g00002.1 119 REIKYTRTGCLAVMYVKRDKdTGKYHVSKFATEHNHGLA 157
                                     78899**************99***************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-1540157IPR004330FAR1 DNA binding domain
PfamPF105514.4E-30279373IPR018289MULE transposase domain
PROSITE profilePS509668.963562598IPR007527Zinc finger, SWIM-type
SMARTSM005750.0082573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
GIGGGFDSEW LSLLQGKNMK MLRLEDVKDI GFTSVQQAEQ FYSYYSYIVG FSTKRYKIEK  60
RHVKGTEVIF RRAWACSKEG HCKTLKNKKQ VPFVLKVGED GNEKAGTEKS KGKKKDVARE  120
IKYTRTGCLA VMYVKRDKDT GKYHVSKFAT EHNHGLACIS ERHFLRSHRH VSVQDIAEVL  180
ALQEAQVSTS VAYDYLVNQA GGQEFVGFML KDLYNKMDAN RKLNTEVGDA QAAMNWLKIK  240
GKEDPQFFCR YTKDADGRLA NLFWRDHGSL MDYEAYGDVL IIDSTYKTNI YGMPLVLFVG  300
ANNHRGSVVF ACALVSNEKE DTFTWVIEKF LASMKNNPPK SVVTDGDEAM RKVLSNLMPG  360
ARPRLCAWHI GRNVCQNVKN EEVQKKVGKM IYASHTIGEW EEAWQSLIVE YGLENNTWMS  420
SLYAKRERWA EAFCKGHFYG GMCSTQRCEG MNSKLKKRVG KFTRLLDFIS RIYRCIDRLR  480
DRAASDKFKS KNHLRKFDTH MKALEEEAFN TFTDDIFLVI KGQIRMESMF FVSNHVIFGD  540
GKNMMFYVSQ YDQPRRSWTV GYTSESSGLE DVYECNCKLF ESDGVPCCHI FCVMKCARVM  600
KFPKSLECER WTKCSKVNTY GNKACGNVTD NASQVIRGLY EVSFGEKGKA EFGRDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470173.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-82FAR1-related sequence 5